Wednesday, September 15, 2010

bwa 4 bxd29

~/Biosoft/bwa-0.5.8a/bwa aln -c -t 8 ~/GenomeSequence/WholeGenome.fa bsd29mfrag_6_28_10_Sample1_fastq.single.fastq >bsd29mfrag_6_28_10_Sample1_fastq.sai &

~/Biosoft/bwa-0.5.8a/bwa samse ~/GenomeSequence/WholeGenome.fa bsd29mfrag_6_28_10_Sample1_fastq.sai bsd29mfrag_6_28_10_Sample1_fastq.single.fastq >bsd29mfrag_6_28_10_Sample1.sam
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